AnnData object with n_obs × n_vars = 209126 × 17695
obs: 'n_genes', 'fpr', 'tissue', 'prep', 'individual', 'nGenes', 'nUMIs', 'PercentMito', 'PercentRibo', 'Age_bin', 'Sex', 'Sample ID', 'Participant ID', 'Sample ID short', 'RIN score from PAXgene tissue Aliquot', 'RIN score from Frozen tissue Aliquot', 'Autolysis Score', 'Sample Ischemic Time (mins)', 'Tissue Site Detail', 'scrublet', 'scrublet_score', 'barcode', 'batch', 'n_counts', 'tissue-individual-prep', 'Broad cell type', 'Granular cell type', 'introns', 'junctions', 'exons', 'sense', 'antisense', 'intergenic', 'batch-barcode', 'exon_ratio', 'intron_ratio', 'junction_ratio', 'log10_nUMIs', 'leiden', 'leiden_tissue', 'Tissue composition', 'Cell types level 2', 'Cell types level 3', 'Broad cell type numbers', 'Broad cell type (numbers)', 'Tissue', 'channel'
var: 'gene_ids', 'Chromosome', 'Source', 'Start', 'End', 'Strand', 'gene_name', 'gene_source', 'gene_biotype', 'gene_length', 'gene_coding_length', 'Approved symbol', 'Approved name', 'Status', 'Previous symbols', 'Alias symbols', 'gene_include', 'n_cells'
uns: 'Broad cell type (numbers)_colors', 'Broad cell type numbers_colors', 'Broad cell type_colors', 'Broad cell type_logregcv_vae_colors', 'Broad cell type_sizes', 'Granular cell type_colors', 'Participant ID_colors', 'Sex_colors', 'Tissue composition_colors', 'Tissue_colors', "dendrogram_['Broad cell type']", 'leiden', 'leiden_colors', 'leiden_sub_colors', 'neighbors', 'paga', 'prep_colors', 'tissue_colors', 'umap'
obsm: 'X_pca', 'X_umap', 'X_umap_tissue', 'X_vae_mean', 'X_vae_mean_tissue', 'X_vae_samples', 'X_vae_var'
varm: 'spring_leiden_sub'
layers: 'counts'
obsp: 'connectivities', 'distances'