Variable expectations

Title Categories Description Reading Time
In silico fragment synthesis with combinatorial chemistry cheminformatics,LNP Revisiting LNP libraries for rational design 4 min
Sourcing structures for in silico LNP discovery cheminformatics,LNP Getting ionizable lipid structures from online catalogs 3 min
Combinatorial chemistry and in silico decompositions cheminformatics,LNP Decomposition as inverted synthesis 1 min
Lightweight, interactive QSAR importance plots dataviz,cheminformatics A self-contained visualization of atomic contributions to models 3 min
Foundations of concentration and entropy statmech Where entropy comes from 10 min
Building graphs from gene sets dataviz,genomics Gene-gene graphs and the Gene Ontology 5 min
Probability densities on embeddings graphs,genomics,statistics Tools for modeling distributions on data neighborhoods 8 min
Generating samples from kNN graphs graphs,ML For “stationary” signals 5 min
The SVD and friends statistics,ML Breaking down a (sparse) matrix quickly 11 min
Tree! I am no tree! I am an embedding! graphs,ML Hierarchies on data 8 min
Detecting motifs in networks graphs,ML Some linear algebra one-liners 4 min
Constructing data-driven neighborhood graphs graphs,ML Building neighborhood graphs from datasets 12 min
SVD-based imputation methods graphs,statistics Using the SVD to perform ultra-efficient imputation 1 min
Laplacian regularization and trend filtering graphs,statistics Using graphs to regularize learning 8 min
Localized graph descriptions graphs,ML Learning an interpretable coordinate system for a dataset 4 min
Looking up gene sets in databases dataviz,genomics Some wrapper code for gProfiler 0 min
Interactive browser, part 3 - subset selection and scaling dataviz,genomics Repurposing for single-cell data 10 min
Graph-based semi-supervised prediction graphs,ML Harmonic analysis for learning on graphs 8 min
From local change to global order graphs,ML Calculus on graphs as manifolds 17 min
Random projections and dimensionality reduction graphs,ML Efficient, general applied tools 9 min
Graph sparsification graphs,ML Removing edges while maintaining connectivity 13 min
Making animations and gifs dataviz Stringing together plots into gifs 1 min
Interactive browser, part 2 dataviz,cheminformatics An interactively clustered heatmap 7 min
Building an interactive data browser dataviz,cheminformatics Lightweight, performant exploration of chemical space 9 min
Measuring association between variables statistics A few new coefficients 12 min
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